BioShell programs

Currently, BioShell distribution provides the following programs:

seqc (cookbook recipes):

sequence converter : a utility to convert between sequence data formats

strc (cookbook recipes):

structure converter : a utility to work with PDB files

str_calc (cookbook recipes):

structure calculator; perform various calculations on a PDB file

clust (cookbook recipes):

calculates hierarchical clustering of arbitrary objects based on a map of pairwise distances between them

hist (cookbook recipes):

simple utulity to make 1D and 2D histograms

Now you can browse BioShell cookbook, or read tutorials, listed below

Tutorials

• clust tutorial : clustering sequences and structures
  • Example 1. Clustering protein sequences by their mutual sequence identity
  • Example 2. Clustering results of protein-peptide docking

Cookbooks

• BioShell cookbook
  • bash-only recipes
  • 1. seqc recipes
  • 2. strc recipes
  • 3. str_calc recipes
  • 4. clust recipes
  • 5. hist recipes